shapely>=2.0.0
tqdm>=4.61.2
opencv-python-headless>=4.5.5
rtree>=0.9.7
pillow>=8.3.1
scikit-learn>=1.0
scipy>=1.9
scikit-image>=0.19.1
seaborn>=0.11.2
roifile>=2021.6.6
tifffile>=2020.11.18
pycocotools>=2.0.7
pint>=0.18
pint-pandas>=0.5
papermill>=2.6.0
numpy>=1.23.1
rasterio>=1.3.6
retry>=0.9.2
imagecodecs
influxdb_client
ipywidgets>=8.0.0
plotly
fsspec>=2023.1.0
platformdirs>=3.0.0
imageio>=2.0
moviepy<2
statsmodels>=0.14

[:python_version < "3.11"]
tomli>=2.0.0

[cellpose]
cellpose<4

[cellpose-sam]
cellpose>=4

[czi]
aicspylibczi>=3.1

[delta]
delta-microscopy[torch-cpu]

[dev]
ruff>=0.15.0
mypy>=1.19.0
pre-commit>=3.0.0
pytest>=8.0.0
pytest-cov>=5.0.0
pytest-sugar>=1.0.0
ipykernel>=6.0
coverage>=7.0.0
tox>=4.0.0
build
twine>=5.0.0
bump-my-version>=0.20.0

[docs]
sphinx>=7.0.0
pydata-sphinx-theme>=0.15
myst-nb>=1.1
sphinx-copybutton>=0.5
sphinx-design>=0.6
ipykernel>=6.0

[flowpose-rt]
flowpose-rt
torch

[lineage]
openlineage-python>=1.0

[microsam]
micro_sam

[nd2]
nd2>=0.10

[notebook]
ipywidgets>=8.0.0

[omero]
omero-py>=5.9.3

[omnipose]
omnipose==1.0.6
torch
torchvision
torchaudio
natsort
scipy==1.11.4

[remote]
smbprotocol>=1.10.0
keyring>=24.0.0

[report]
nbconvert>=7.0

[stardist]
stardist
tensorflow

[widget]
anywidget>=0.9
