AUTHORS.rst
CHANGELOG.md
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.md
pyproject.toml
acia/__init__.py
acia/acia.py
acia/attribute.py
acia/base.py
acia/cli.py
acia/colors.py
acia/config.py
acia/crop_capture.py
acia/notebook.py
acia/registration.py
acia/registration_persistence.py
acia/selection.py
acia/timing.py
acia/utils.py
acia.egg-info/PKG-INFO
acia.egg-info/SOURCES.txt
acia.egg-info/dependency_links.txt
acia.egg-info/entry_points.txt
acia.egg-info/requires.txt
acia.egg-info/top_level.txt
acia/analysis/__init__.py
acia/analysis/_scale_progress.py
acia/analysis/_stage_io.py
acia/analysis/doubling_time.py
acia/analysis/growth_rate.py
acia/analysis/lineage.py
acia/analysis/properties.py
acia/analysis/stage.py
acia/analysis/units.py
acia/segm/__init__.py
acia/segm/czi_source.py
acia/segm/filter.py
acia/segm/folder_source.py
acia/segm/formats.py
acia/segm/local.py
acia/segm/nd2_source.py
acia/segm/open.py
acia/segm/output.py
acia/segm/rasterize.py
acia/segm/tiff_export.py
acia/segm/tiff_metadata.py
acia/segm/utils.py
acia/segm/omero/__init__.py
acia/segm/omero/shapeUtils.py
acia/segm/omero/storer.py
acia/segm/omero/utils.py
acia/segm/processor/__init__.py
acia/segm/processor/canny.py
acia/segm/processor/cellpose.py
acia/segm/processor/cellpose_sam.py
acia/segm/processor/cpn.py
acia/segm/processor/delta.py
acia/segm/processor/flowpose_rt.py
acia/segm/processor/microsam.py
acia/segm/processor/offline.py
acia/segm/processor/omnipose.py
acia/segm/processor/online.py
acia/segm/processor/predict.py
acia/segm/processor/stardist.py
acia/segm/processor/yolo.py
acia/tracking/__init__.py
acia/tracking/formats.py
acia/tracking/output.py
acia/tracking/utils.py
acia/tracking/processor/__init__.py
acia/tracking/processor/laptrack.py
acia/tracking/processor/pyuat.py
acia/tracking/processor/trackastra.py
acia/tracking/processor/ultrack.py
acia/tracking/processor/utils.py
acia/viz/__init__.py
acia/viz/compose.py
acia/viz/utils.py
docs/Makefile
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/make.bat
docs/_templates/autosummary/module.rst
docs/api/index.rst
tests/__init__.py
tests/test_base.py
tests/test_calibration.py
tests/test_config.py
tests/test_property_equivalence.py
tests/test_registration.py
tests/test_registration_persistence.py
tests/test_selection.py
tests/test_utils.py
tests/analysis/__init__.py
tests/analysis/test_doubling_time.py
tests/analysis/test_extract_growth.py
tests/analysis/test_fluorescence_pixels.py
tests/analysis/test_growth_rate.py
tests/analysis/test_properties.py
tests/analysis/test_property_extractor.py
tests/analysis/test_scale.py
tests/analysis/test_scale_progress.py
tests/analysis/test_stage.py
tests/analysis/test_stage_io.py
tests/analysis/test_stage_recording.py
tests/analysis/test_units.py
tests/equivalence/__init__.py
tests/equivalence/_generate.py
tests/equivalence/golden.npz
tests/equivalence/scenes.py
tests/notebook/__init__.py
tests/notebook/test_channel_overlay_interaction.py
tests/notebook/test_e2e_overlay_flow.py
tests/notebook/test_filter_explorer.py
tests/notebook/test_filter_explorer_esm_playwright.py
tests/notebook/test_jupyter_integration.py
tests/notebook/test_overlay_frame_sync.py
tests/notebook/test_overlay_widgets.py
tests/notebook/test_registration_dashboard.py
tests/notebook/test_repr_html_raw_single_channel.py
tests/notebook/test_roi_cropper.py
tests/notebook/test_roi_cropper_esm_playwright.py
tests/notebook/test_roi_cropper_import_safety.py
tests/notebook/test_sequence_dashboard.py
tests/segm/__init__.py
tests/segm/test_canny.py
tests/segm/test_cell_filter.py
tests/segm/test_crop_capture.py
tests/segm/test_crop_rotated.py
tests/segm/test_czi_source.py
tests/segm/test_delta.py
tests/segm/test_extraction.py
tests/segm/test_flowpose_rt.py
tests/segm/test_folder_source.py
tests/segm/test_fs_source.py
tests/segm/test_microsam.py
tests/segm/test_nd2_source.py
tests/segm/test_open_sequence.py
tests/segm/test_persistence_geometry.py
tests/segm/test_release.py
tests/segm/test_segmentation_persistence.py
tests/segm/test_slicing.py
tests/segm/test_stardist.py
tests/segm/test_tiff_export.py
tests/segm/test_tiff_metadata.py
tests/segm/test_to_rgb.py
tests/segm/test_utils.py
tests/segm/omero/__init__.py
tests/tracking/test_formats.py
tests/tracking/test_lineage_time.py
tests/tracking/test_overlay_to_masks.py
tests/tracking/test_processors.py
tests/tracking/test_subsampling.py
tests/tracking/test_tracking_persistence.py
tests/viz/test_compose.py
tests/viz/test_lineage_rendering.py
tests/viz/test_lineage_segments.py
tests/viz/test_main.py
tests/viz/test_mask_rasterization.py
tests/viz/test_overlay_rendering.py
tests/viz/test_render_functions.py
tests/viz/test_segmentation_mask_colors.py
tests/viz/test_utils.py
tests/viz/test_video_gen.py